3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
AG*CAUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZCE_044 not in the Motif Atlas
Geometric match to IL_6N5P_003
Geometric discrepancy: 0.1468
The information below is about IL_6N5P_003
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

6ZCE|1|A|A|865
6ZCE|1|A|G|866
*
6ZCE|1|A|C|962
6ZCE|1|A|A|963
6ZCE|1|A|U|964
6ZCE|1|A|U|965

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain O
40S ribosomal protein S13
Chain X
40S ribosomal protein S22-A
Chain c
40S ribosomal protein S27-A

Coloring options:


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