IL_6ZCE_045

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZCE|1|A|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_045 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2527

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZCE|1|A|G|868
6ZCE|1|A|A|869
6ZCE|1|A|C|870
*
6ZCE|1|A|G|957
6ZCE|1|A|U|958
6ZCE|1|A|U|959
6ZCE|1|A|U|960

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain O

40S ribosomal protein S13

Chain c

40S ribosomal protein S27-A