IL_6ZCE_072

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6ZCE|1|A|A|1346, 6ZCE|1|A|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_072 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1852

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZCE|1|A|A|1345
6ZCE|1|A|A|1346
6ZCE|1|A|U|1347
6ZCE|1|A|A|1348
*
6ZCE|1|A|U|1377
6ZCE|1|A|U|1378
6ZCE|1|A|C|1379
6ZCE|1|A|U|1380

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain R

40S ribosomal protein S16-A

Chain V

40S ribosomal protein S20