IL_6ZCE_080

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_080 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1715

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6ZCE|1|A|G|1638
6ZCE|1|A|C|1639
6ZCE|1|A|C|1640
6ZCE|1|A|C|1641
*
6ZCE|1|A|G|1760
6ZCE|1|A|U|1761
6ZCE|1|A|A|1762
6ZCE|1|A|A|1763
6ZCE|1|A|C|1764

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain m

Eukaryotic translation initiation factor eIF-1