IL_6ZCE_084

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_084 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1479

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6ZCE|1|A|C|1653
6ZCE|1|A|G|1654
6ZCE|1|A|A|1655
6ZCE|1|A|U|1656
*
6ZCE|1|A|A|1744
6ZCE|1|A|G|1745
6ZCE|1|A|A|1746
6ZCE|1|A|G|1747

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain k

Translation initiation factor RLI1