IL_6ZCE_092

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCCCGG*CGGGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_092 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3723

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6ZCE|1|A|G|643
6ZCE|1|A|C|644
6ZCE|1|A|C|645
6ZCE|1|A|C|646
6ZCE|1|A|G|647
6ZCE|1|A|G|648
*
6ZCE|1|A|C|686
6ZCE|1|A|G|687
6ZCE|1|A|G|688
6ZCE|1|A|G|689
6ZCE|1|A|G|690
6ZCE|1|A|C|691

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain I

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S22-A