IL_6ZCE_102

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAU*AAUU

Length

7 nucleotides

Bulged bases

6ZCE|1|A|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_102 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.2205

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6ZCE|1|A|G|480
6ZCE|1|A|A|481
6ZCE|1|A|U|482
*
6ZCE|1|A|A|505
6ZCE|1|A|A|506
6ZCE|1|A|U|507
6ZCE|1|A|U|508

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain K

40S ribosomal protein S9-A

Chain f

40S ribosomal protein S30-A

Chain p

Eukaryotic translation initiation factor 3 subunit B