IL_6ZJ3_008

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_008 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1193

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6ZJ3|1|LA|C|147
6ZJ3|1|LA|C|148
6ZJ3|1|LA|U|149
*
6ZJ3|1|LB|A|178
6ZJ3|1|LB|U|179
6ZJ3|1|LB|G|180

Current chains

Chain LA

5.8S rRNA

Chain LB

LSU rRNA chain 1

Nearby chains

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain Lb

Ribosomal protein eL15

Chain Lk

Ribosomal protein uL23

Chain Lp

Ribosomal protein uL29