IL_6ZJ3_023
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- G(OMG)UG*CUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_023 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2565
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6ZJ3|1|LC|G|630
6ZJ3|1|LC|OMG|631
6ZJ3|1|LC|U|632
6ZJ3|1|LC|G|633
*
6ZJ3|1|LE|C|917
6ZJ3|1|LE|U|918
6ZJ3|1|LE|C|919
6ZJ3|1|LE|U|920
Current chains
- Chain LC
- LSU rRNA chain 2
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LW
- Ribosomal protein uL13
- Chain Lu
- Ribosomal protein eL32
- Chain Lv
- Ribosomal protein eL33
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