IL_6ZJ3_035

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCACCG*CUUGCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_035 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3953

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6ZJ3|1|LE|G|802
6ZJ3|1|LE|C|803
6ZJ3|1|LE|A|804
6ZJ3|1|LE|C|805
6ZJ3|1|LE|C|806
6ZJ3|1|LE|G|807
*
6ZJ3|1|LE|C|836
6ZJ3|1|LE|U|837
6ZJ3|1|LE|U|838
6ZJ3|1|LE|G|839
6ZJ3|1|LE|C|840
6ZJ3|1|LE|U|841

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain L6

Ribosomal protein eLEgr2