IL_6ZJ3_049
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GUGAAG*UGGAAGC
- Length
- 13 nucleotides
- Bulged bases
- 6ZJ3|1|LE|G|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_049 not in the Motif Atlas
- Geometric match to IL_3FTF_001
- Geometric discrepancy: 0.2018
- The information below is about IL_3FTF_001
- Detailed Annotation
- Quadruple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_29495.1
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LE|G|1132
6ZJ3|1|LE|U|1133
6ZJ3|1|LE|G|1134
6ZJ3|1|LE|A|1135
6ZJ3|1|LE|A|1136
6ZJ3|1|LE|G|1137
*
6ZJ3|1|LE|U|1154
6ZJ3|1|LE|G|1155
6ZJ3|1|LE|G|1156
6ZJ3|1|LE|A|1157
6ZJ3|1|LE|A|1158
6ZJ3|1|LE|G|1159
6ZJ3|1|LE|C|1160
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lf
- Ribosomal protein eL19
Coloring options: