IL_6ZJ3_059
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GCAAC*GAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_059 not in the Motif Atlas
- Geometric match to IL_4V88_443
- Geometric discrepancy: 0.2821
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6ZJ3|1|LE|G|1319
6ZJ3|1|LE|C|1320
6ZJ3|1|LE|A|1321
6ZJ3|1|LE|A|1322
6ZJ3|1|LE|C|1323
*
6ZJ3|1|LE|G|1370
6ZJ3|1|LE|A|1371
6ZJ3|1|LE|A|1372
6ZJ3|1|LE|C|1373
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Ld
- Ribosomal protein uL18
- Chain Lh
- Ribosomal protein eL21
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