IL_6ZJ3_075
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUCAUACUCAG*CCCAAG
- Length
- 17 nucleotides
- Bulged bases
- 6ZJ3|1|LF|U|1560, 6ZJ3|1|LF|U|1563, 6ZJ3|1|LF|C|1564, 6ZJ3|1|LF|C|1688, 6ZJ3|1|LF|A|1690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_075 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1631
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LF|C|1556
6ZJ3|1|LF|U|1557
6ZJ3|1|LF|C|1558
6ZJ3|1|LF|A|1559
6ZJ3|1|LF|U|1560
6ZJ3|1|LF|A|1561
6ZJ3|1|LF|C|1562
6ZJ3|1|LF|U|1563
6ZJ3|1|LF|C|1564
6ZJ3|1|LF|A|1565
6ZJ3|1|LF|G|1566
*
6ZJ3|1|LF|C|1686
6ZJ3|1|LF|C|1687
6ZJ3|1|LF|C|1688
6ZJ3|1|LF|A|1689
6ZJ3|1|LF|A|1690
6ZJ3|1|LF|G|1691
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain L2
- Ribosomal protein eL40
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LT
- Ribosomal protein uL6
- Chain LW
- Ribosomal protein uL13
- Chain LZ
- Ribosomal protein eL14
- Chain Lg
- Ribosomal protein eL20
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