IL_6ZJ3_117

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_117 not in the Motif Atlas

Geometric match to IL_5H1K_001

Geometric discrepancy: 0.2226

The information below is about IL_5H1K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6ZJ3|1|LH|G|2650
6ZJ3|1|LH|A|2651
6ZJ3|1|LH|C|2652
*
6ZJ3|1|LH|G|2658
6ZJ3|1|LH|G|2659
6ZJ3|1|LH|C|2660

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain Lb

Ribosomal protein eL15