IL_6ZJ3_136
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- G(PSU)(PSU)U*AG(PSU)U
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_136 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.3909
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
6ZJ3|1|LH|G|2913
6ZJ3|1|LH|PSU|2914
6ZJ3|1|LH|PSU|2915
6ZJ3|1|LH|U|2916
*
6ZJ3|1|LI|A|3173
6ZJ3|1|LI|G|3174
6ZJ3|1|LI|PSU|3175
6ZJ3|1|LI|U|3176
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lb
- Ribosomal protein eL15
- Chain S4
- Transfer RNA; tRNA
Coloring options: