IL_6ZJ3_145
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAG*CAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_145 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.178
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LI|C|3239
6ZJ3|1|LI|A|3240
6ZJ3|1|LI|G|3241
*
6ZJ3|1|LI|C|3259
6ZJ3|1|LI|A|3260
6ZJ3|1|LI|G|3261
6ZJ3|1|LI|G|3262
6ZJ3|1|LI|G|3263
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain LS
- Ribosomal protein uL5
- Chain Ld
- Ribosomal protein uL18
- Chain Lh
- Ribosomal protein eL21
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