IL_6ZJ3_149
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- U(OMC)(A2M)AGUGUG(OMC)GAAU*AG
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|LI|U|3353, 6ZJ3|1|LI|G|3354
- QA status
- Modified nucleotides: OMC, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_149 not in the Motif Atlas
- Geometric match to IL_5TBW_085
- Geometric discrepancy: 0.1747
- The information below is about IL_5TBW_085
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
6ZJ3|1|LI|U|3346
6ZJ3|1|LI|OMC|3347
6ZJ3|1|LI|A2M|3348
6ZJ3|1|LI|A|3349
6ZJ3|1|LI|G|3350
6ZJ3|1|LI|U|3351
6ZJ3|1|LI|G|3352
6ZJ3|1|LI|U|3353
6ZJ3|1|LI|G|3354
6ZJ3|1|LI|OMC|3355
6ZJ3|1|LI|G|3356
6ZJ3|1|LI|A|3357
6ZJ3|1|LI|A|3358
6ZJ3|1|LI|U|3359
*
6ZJ3|1|LI|A|3372
6ZJ3|1|LI|G|3373
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
Coloring options: