IL_6ZJ3_180
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CC*GGUG
- Length
- 6 nucleotides
- Bulged bases
- 6ZJ3|1|LL|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_180 not in the Motif Atlas
- Geometric match to IL_3IGI_013
- Geometric discrepancy: 0.2005
- The information below is about IL_3IGI_013
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
6ZJ3|1|LL|C|3830
6ZJ3|1|LL|C|3831
*
6ZJ3|1|LL|G|3838
6ZJ3|1|LL|G|3839
6ZJ3|1|LL|U|3840
6ZJ3|1|LL|G|3841
Current chains
- Chain LL
- LSU rRNA chain 11
Nearby chains
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LK
- LSU rRNA chain 10
- Chain LQ
- Ribosomal protein uL3
- Chain LW
- Ribosomal protein uL13
- Chain LZ
- Ribosomal protein eL14
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