IL_6ZJ3_187

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMC)A*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_187 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.1534

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6ZJ3|1|LM|G|3954
6ZJ3|1|LM|OMC|3957
6ZJ3|1|LM|A|3958
*
6ZJ3|1|LN|U|3974
6ZJ3|1|LN|C|3975
6ZJ3|1|LN|C|3976

Current chains

Chain LM

LSU rRNA chain 12

Chain LN

LSU rRNA chain 13

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain Lm

Ribosomal protein eL24