IL_6ZJ3_203

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UCAU*AG

Length

6 nucleotides

Bulged bases

6ZJ3|1|S1|C|113, 6ZJ3|1|S1|A|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_203 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1662

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZJ3|1|S1|U|112
6ZJ3|1|S1|C|113
6ZJ3|1|S1|A|114
6ZJ3|1|S1|U|115
*
6ZJ3|1|S1|A|399
6ZJ3|1|S1|G|400

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SK

Ribosomal protein eS8

Chain SU

Ribosomal protein uS17