IL_6ZJ3_208

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCAC*G(OMU)(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_208 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2106

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZJ3|1|S1|C|165
6ZJ3|1|S1|C|166
6ZJ3|1|S1|A|167
6ZJ3|1|S1|C|168
*
6ZJ3|1|S1|G|178
6ZJ3|1|S1|OMU|179
6ZJ3|1|S1|OMG|180
6ZJ3|1|S1|G|181

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain SZ

Ribosomal protein eS24