IL_6ZJ3_213
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UAUCAG*CCUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6ZJ3|1|S1|U|412, 6ZJ3|1|S1|U|448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_213 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.096
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6ZJ3|1|S1|U|410
6ZJ3|1|S1|A|411
6ZJ3|1|S1|U|412
6ZJ3|1|S1|C|413
6ZJ3|1|S1|A|414
6ZJ3|1|S1|G|415
*
6ZJ3|1|S1|C|445
6ZJ3|1|S1|C|446
6ZJ3|1|S1|U|447
6ZJ3|1|S1|U|448
6ZJ3|1|S1|G|449
6ZJ3|1|S1|A|450
6ZJ3|1|S1|C|451
6ZJ3|1|S1|G|452
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain SK
- Ribosomal protein eS8
- Chain SP
- Ribosomal protein uS12
- Chain SU
- Ribosomal protein uS17
Coloring options: