IL_6ZJ3_217

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCCA(PSU)G*UGAG

Length

10 nucleotides

Bulged bases

6ZJ3|1|S1|G|560

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_217 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.2864

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6ZJ3|1|S1|C|540
6ZJ3|1|S1|C|541
6ZJ3|1|S1|C|542
6ZJ3|1|S1|A|543
6ZJ3|1|S1|PSU|544
6ZJ3|1|S1|G|545
*
6ZJ3|1|S1|U|559
6ZJ3|1|S1|G|560
6ZJ3|1|S1|A|561
6ZJ3|1|S1|G|562

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SE

Ribosomal protein eS4

Chain SZ

Ribosomal protein eS24