IL_6ZJ3_223
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|S1|A|683, 6ZJ3|1|S1|U|685, 6ZJ3|1|S1|U|686
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_223 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1303
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|S1|G|666
6ZJ3|1|S1|U|667
6ZJ3|1|S1|G|668
6ZJ3|1|S1|C|669
6ZJ3|1|S1|C|670
6ZJ3|1|S1|A|671
6ZJ3|1|S1|G|672
*
6ZJ3|1|S1|C|679
6ZJ3|1|S1|G|680
6ZJ3|1|S1|G|681
6ZJ3|1|S1|OMU|682
6ZJ3|1|S1|A|683
6ZJ3|1|S1|A|684
6ZJ3|1|S1|U|685
6ZJ3|1|S1|U|686
6ZJ3|1|S1|C|687
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SC
- Ribosomal protein uS3
- Chain SP
- Ribosomal protein uS12
- Chain Se
- Ribosomal protein eS30
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