IL_6ZJ3_224

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_224 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1175

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|S1|G|720
6ZJ3|1|S1|U|721
6ZJ3|1|S1|U|722
6ZJ3|1|S1|A2M|723
6ZJ3|1|S1|A|724
6ZJ3|1|S1|A|725
6ZJ3|1|S1|A|726
*
6ZJ3|1|S1|U|1514
6ZJ3|1|S1|C|1515

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain SP

Ribosomal protein uS12

Chain Sb

Ribosomal protein eS26