IL_6ZJ3_226
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_226 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0913
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZJ3|1|S1|U|731
6ZJ3|1|S1|G|732
6ZJ3|1|S1|U|733
6ZJ3|1|S1|A|734
6ZJ3|1|S1|G|735
*
6ZJ3|1|S1|U|1365
6ZJ3|1|S1|C|1366
6ZJ3|1|S1|A|1367
6ZJ3|1|S1|A|1368
6ZJ3|1|S1|G|1369
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain SJ
- Ribosomal protein uS8
- Chain SP
- Ribosomal protein uS12
- Chain ST
- Ribosomal protein uS15
- Chain SU
- Ribosomal protein uS17
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