IL_6ZJ3_249
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|S1|G|1273
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_249 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1246
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6ZJ3|1|S1|C|1271
6ZJ3|1|S1|G|1272
6ZJ3|1|S1|G|1273
6ZJ3|1|S1|G|1274
6ZJ3|1|S1|G|1275
*
6ZJ3|1|S1|C|1347
6ZJ3|1|S1|A|1348
6ZJ3|1|S1|A|1349
6ZJ3|1|S1|G|1350
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain Ls
- Ribosomal protein eL30
- Chain SA
- Ribosomal protein eS1
- Chain ST
- Ribosomal protein uS15
- Chain Sb
- Ribosomal protein eS26
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