IL_6ZJ3_256
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_256 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.1246
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZJ3|1|S1|C|1387
6ZJ3|1|S1|A|1388
6ZJ3|1|S1|A|1389
6ZJ3|1|S1|A|1390
6ZJ3|1|S1|G|1391
*
6ZJ3|1|S1|C|1407
6ZJ3|1|S1|G|1408
6ZJ3|1|S1|U|1409
6ZJ3|1|S1|A|1410
6ZJ3|1|S1|G|1411
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain SO
- Ribosomal protein uS11
- Chain Sb
- Ribosomal protein eS26
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