IL_6ZJ3_263
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- ACCA*UCC(OMC)U
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|S1|C|1568, 6ZJ3|1|S1|C|1569
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_263 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1607
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6ZJ3|1|S1|A|1567
6ZJ3|1|S1|C|1568
6ZJ3|1|S1|C|1569
6ZJ3|1|S1|A|1570
*
6ZJ3|1|S1|U|2120
6ZJ3|1|S1|C|2121
6ZJ3|1|S1|C|2122
6ZJ3|1|S1|OMC|2123
6ZJ3|1|S1|U|2124
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S3
- Transfer RNA; tRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SH
- Ribosomal protein uS7
- Chain SL
- Ribosomal protein uS9
- Chain Sd
- Ribosomal protein eS28
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