IL_6ZJ3_272

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

6ZJ3|1|S1|U|1917, 6ZJ3|1|S1|G|1920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_272 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.1599

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|S1|U|1686
6ZJ3|1|S1|G|1687
6ZJ3|1|S1|G|1688
*
6ZJ3|1|S1|U|1915
6ZJ3|1|S1|C|1916
6ZJ3|1|S1|U|1917
6ZJ3|1|S1|G|1918
6ZJ3|1|S1|U|1919
6ZJ3|1|S1|G|1920
6ZJ3|1|S1|A|1921

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SC

Ribosomal protein uS3

Chain SM

Ribosomal protein uS10

Chain SN

Ribosomal protein eS10

Chain SS

Ribosomal protein uS14