IL_6ZJ3_317
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GUAGUA(OMG)*(PSU)GAACC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_317 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.2026
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6ZJ3|1|LF|G|1829
6ZJ3|1|LF|U|1830
6ZJ3|1|LF|A|1831
6ZJ3|1|LF|G|1832
6ZJ3|1|LF|U|1833
6ZJ3|1|LF|A|1834
6ZJ3|1|LF|OMG|1835
*
6ZJ3|1|LH|PSU|2842
6ZJ3|1|LH|G|2843
6ZJ3|1|LH|A|2844
6ZJ3|1|LH|A|2845
6ZJ3|1|LH|C|2846
6ZJ3|1|LH|C|2847
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Li
- Ribosomal protein uL22
Coloring options: