IL_6ZJ3_342
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (OMU)CCCCU*ACCAA
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LJ|C|3682, 6ZJ3|1|LJ|C|3683
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_342 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.2177
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LJ|OMU|3636
6ZJ3|1|LJ|C|3637
6ZJ3|1|LJ|C|3638
6ZJ3|1|LJ|C|3639
6ZJ3|1|LJ|C|3640
6ZJ3|1|LJ|U|3641
*
6ZJ3|1|LJ|A|3681
6ZJ3|1|LJ|C|3682
6ZJ3|1|LJ|C|3683
6ZJ3|1|LJ|A|3684
6ZJ3|1|LJ|A|3685
Current chains
- Chain LJ
- LSU rRNA chain 9
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain LQ
- Ribosomal protein uL3
- Chain LY
- Ribosomal protein uL14
- Chain Lm
- Ribosomal protein eL24
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