IL_6ZJ3_359

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

(PSU)U*GCCA

Length

6 nucleotides

Bulged bases

6ZJ3|1|S1|C|1417, 6ZJ3|1|S1|C|1418

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_359 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.1815

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ZJ3|1|S1|PSU|1378
6ZJ3|1|S1|U|1379
*
6ZJ3|1|S1|G|1416
6ZJ3|1|S1|C|1417
6ZJ3|1|S1|C|1418
6ZJ3|1|S1|A|1419

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L5

Ribosomal protein eL42

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain ST

Ribosomal protein uS15