IL_6ZJ3_364
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|S1|C|1684, 6ZJ3|1|S1|U|1917, 6ZJ3|1|S1|G|1920
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_364 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1216
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|S1|U|1682
6ZJ3|1|S1|G|1683
6ZJ3|1|S1|C|1684
6ZJ3|1|S1|A|1685
6ZJ3|1|S1|U|1686
6ZJ3|1|S1|G|1687
6ZJ3|1|S1|G|1688
*
6ZJ3|1|S1|U|1915
6ZJ3|1|S1|C|1916
6ZJ3|1|S1|U|1917
6ZJ3|1|S1|G|1918
6ZJ3|1|S1|U|1919
6ZJ3|1|S1|G|1920
6ZJ3|1|S1|A|1921
6ZJ3|1|S1|U|1922
6ZJ3|1|S1|G|1923
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SC
- Ribosomal protein uS3
- Chain SM
- Ribosomal protein uS10
- Chain SN
- Ribosomal protein eS10
- Chain SS
- Ribosomal protein uS14
- Chain Se
- Ribosomal protein eS30
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