IL_6ZLW_021

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6ZLW|1|2|U|361, 6ZLW|1|2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_021 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0786

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZLW|1|2|U|359
6ZLW|1|2|A|360
6ZLW|1|2|U|361
6ZLW|1|2|C|362
6ZLW|1|2|A|363
6ZLW|1|2|A|364
*
6ZLW|1|2|U|396
6ZLW|1|2|G|397
6ZLW|1|2|A|398
6ZLW|1|2|C|399
6ZLW|1|2|C|400
6ZLW|1|2|A|401
6ZLW|1|2|C|402
6ZLW|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain X

40S ribosomal protein S23