IL_6ZLW_084

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_084 not in the Motif Atlas

Geometric match to IL_1G1X_006

Geometric discrepancy: 0.332

The information below is about IL_1G1X_006

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6ZLW|1|2|C|1708
6ZLW|1|2|G|1709
6ZLW|1|2|C|1710
6ZLW|1|2|U|1711
*
6ZLW|1|2|A|1822
6ZLW|1|2|A|1823
6ZLW|1|2|A|1824
6ZLW|1|2|A|1825
6ZLW|1|2|G|1826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41