IL_6ZM5_008
3D structure
- PDB id
- 6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6ZM5|1|A|G|2011, 6ZM5|1|A|G|2015
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZM5_008 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.1307
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZM5|1|A|G|1906
6ZM5|1|A|A|1907
6ZM5|1|A|A|1908
6ZM5|1|A|A|1909
6ZM5|1|A|C|1910
*
6ZM5|1|A|G|2009
6ZM5|1|A|U|2010
6ZM5|1|A|G|2011
6ZM5|1|A|A|2012
6ZM5|1|A|U|2013
6ZM5|1|A|A|2014
6ZM5|1|A|G|2015
6ZM5|1|A|C|2016
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: