IL_6ZM5_050

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6ZM5|1|A|A|3059, 6ZM5|1|A|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_050 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.1259

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6ZM5|1|A|C|2999
6ZM5|1|A|A|3000
*
6ZM5|1|A|U|3058
6ZM5|1|A|A|3059
6ZM5|1|A|C|3060
6ZM5|1|A|G|3061

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain K

39S ribosomal protein L13, mitochondrial

Chain w

Transfer RNA; tRNA