IL_6ZM5_052

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6ZM5|1|A|A|3089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_052 not in the Motif Atlas

Geometric match to IL_8UO6_001

Geometric discrepancy: 0.3886

The information below is about IL_8UO6_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6ZM5|1|A|C|3078
6ZM5|1|A|G|3079
*
6ZM5|1|A|C|3088
6ZM5|1|A|A|3089
6ZM5|1|A|G|3090

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain w

Transfer RNA; tRNA

Chain x

Transfer RNA; tRNA