IL_6ZM5_057

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

6ZM5|1|AA|U|650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_057 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3852

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6ZM5|1|AA|A|649
6ZM5|1|AA|U|650
6ZM5|1|AA|A|651
*
6ZM5|1|AA|U|667
6ZM5|1|AA|U|668

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AO

28S ribosomal protein S18b, mitochondrial