IL_6ZM5_078

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_078 not in the Motif Atlas

Geometric match to IL_5J7L_036

Geometric discrepancy: 0.2189

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6ZM5|1|AA|G|1062
6ZM5|1|AA|A|1063
6ZM5|1|AA|C|1064
6ZM5|1|AA|C|1065
6ZM5|1|AA|C|1066
*
6ZM5|1|AA|G|1092
6ZM5|1|AA|C|1093

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial