IL_6ZM7_085

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6ZM7|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_085 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2904

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ZM7|1|L5|U|1957
6ZM7|1|L5|A|1958
6ZM7|1|L5|U|1959
6ZM7|1|L5|A|1960
6ZM7|1|L5|G|1961
6ZM7|1|L5|A|1962
6ZM7|1|L5|C|1963
6ZM7|1|L5|A|1964
6ZM7|1|L5|G|1965
*
6ZM7|1|L5|C|2022
6ZM7|1|L5|C|2023
6ZM7|1|L5|G|2024
6ZM7|1|L5|A|2025
6ZM7|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

60S acidic ribosomal protein P0