IL_6ZM7_200

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6ZM7|1|S2|U|305, 6ZM7|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_200 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.38

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ZM7|1|S2|C|216
6ZM7|1|S2|A|217
6ZM7|1|S2|U|218
6ZM7|1|S2|U|219
*
6ZM7|1|S2|A|302
6ZM7|1|S2|C|303
6ZM7|1|S2|C|304
6ZM7|1|S2|U|305
6ZM7|1|S2|C|306
6ZM7|1|S2|G|307
6ZM7|1|S2|G|308
6ZM7|1|S2|G|309

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8