IL_6ZME_039

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6ZME|1|L5|G|748, 6ZME|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_039 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1649

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZME|1|L5|G|745
6ZME|1|L5|A|746
6ZME|1|L5|A|747
6ZME|1|L5|G|748
6ZME|1|L5|G|749
6ZME|1|L5|U|750
6ZME|1|L5|G|751
6ZME|1|L5|G|752
*
6ZME|1|L5|U|911
6ZME|1|L5|G|912
6ZME|1|L5|U|913
6ZME|1|L5|U|914
6ZME|1|L5|A|915
6ZME|1|L5|C|916
6ZME|1|L5|A|917
6ZME|1|L5|G|918
6ZME|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a