IL_6ZME_085

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6ZME|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_085 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.2001

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ZME|1|L5|U|1957
6ZME|1|L5|A|1958
6ZME|1|L5|U|1959
6ZME|1|L5|A|1960
6ZME|1|L5|G|1961
6ZME|1|L5|A|1962
6ZME|1|L5|C|1963
6ZME|1|L5|A|1964
6ZME|1|L5|G|1965
*
6ZME|1|L5|C|2022
6ZME|1|L5|C|2023
6ZME|1|L5|G|2024
6ZME|1|L5|A|2025
6ZME|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

60S acidic ribosomal protein P0