IL_6ZME_094

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_094 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0811

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZME|1|L5|G|2358
6ZME|1|L5|U|2359
6ZME|1|L5|A|2360
6ZME|1|L5|G|2361
6ZME|1|L5|U|2362
6ZME|1|L5|A|2363
6ZME|1|L5|G|2364
*
6ZME|1|L5|C|3858
6ZME|1|L5|G|3859
6ZME|1|L5|A|3860
6ZME|1|L5|A|3861
6ZME|1|L5|A|3862
6ZME|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17