IL_6ZME_098

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUGG*CGUU

Length

9 nucleotides

Bulged bases

6ZME|1|L5|U|2485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_098 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3631

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6ZME|1|L5|G|2483
6ZME|1|L5|A|2484
6ZME|1|L5|U|2485
6ZME|1|L5|G|2486
6ZME|1|L5|G|2487
*
6ZME|1|L5|C|2492
6ZME|1|L5|G|2493
6ZME|1|L5|U|2494
6ZME|1|L5|U|2495

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a