IL_6ZME_132
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_132 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.2062
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6ZME|1|L5|C|4243
6ZME|1|L5|A|4244
6ZME|1|L5|G|4245
*
6ZME|1|L5|C|4263
6ZME|1|L5|G|4264
6ZME|1|L5|U|4265
6ZME|1|L5|G|4266
6ZME|1|L5|G|4267
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
- Chain LT
- 60S ribosomal protein L21
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