IL_6ZME_149

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6ZME|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_149 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2233

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZME|1|L5|C|4582
6ZME|1|L5|C|4583
6ZME|1|L5|A|4584
6ZME|1|L5|U|4585
*
6ZME|1|L5|A|4717
6ZME|1|L5|G|4718
6ZME|1|L5|G|4719
6ZME|1|L5|C|4720
6ZME|1|L5|G|4721

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a