IL_6ZME_199

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6ZME|1|S2|U|305, 6ZME|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_199 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3986

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ZME|1|S2|C|216
6ZME|1|S2|A|217
6ZME|1|S2|U|218
6ZME|1|S2|U|219
*
6ZME|1|S2|A|302
6ZME|1|S2|C|303
6ZME|1|S2|C|304
6ZME|1|S2|U|305
6ZME|1|S2|C|306
6ZME|1|S2|G|307
6ZME|1|S2|G|308
6ZME|1|S2|G|309

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8